Processing Microarray Data: Converting to Logarithms
To analyze a large amount of expression data, it’s necessary to use statistical analysis. Unfortunately, fractions are not suitable for statistics.
For this reason, the expression ratios are usually transformed by a log base 2 function. In log base 2, for every increase or decrease of 1, there is a twofold change.
In our example, we will use log base 10 because it is more readily available on a calculator. In log base 10, for every increase or decrease of 1, there is a tenfold change.
Ratio | 0.1 | 0.25 | 0.5 | 1 | 2 | 4 | 10 |
---|---|---|---|---|---|---|---|
Log2 | −3.32 | −2 | −1 | 0 | 1 | 2 | 3.32 |
Log10 | −1 | −0.602 | −0.301 | 0 | 0.301 | 0.602 | 1 |